PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0187700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 34234 Da    PI: 4.8912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0187700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182643031054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  ORGLA03G0187700.1 264 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 303
                        9******************97...333..3458999999999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-7264310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-4264308No hitNo description
SuperFamilySSF474591.83E-6264311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGEKVNPWCH WSNPPWTESS ANNLHPPDVS LDNTNSVALP TYLNSDGYIY SGVAASMPSI  60
AASVTDRPVS FSSRFVTTLV PSVGLSTAET LRKRPLVFFH NVNNTFTVGP LLSKGTLDTV  120
PELQGSNETN VTDVGAQNTE CMHENTEEID ALLCSDSDEG CLKVQELNNR VRKYPMQNDT  180
MSVESVASAG ASQPAKKRRL SSGTDRSVVD TASSARPDHS VDQKHLSHDD DAQSCCIGEV  240
ESDHQFALRE GEEAEGDDGP DDRKRRRERI QETVAALRKI VPGGIAKDAT AVLDEAICYL  300
KYLKLKVKTL GAVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAK0656740.0AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0PREDICTED: transcription factor PIF4
TrEMBLI1PBY10.0I1PBY1_ORYGL; Uncharacterized protein
TrEMBLQ75KP40.0Q75KP4_ORYSJ; Expressed protein
STRINGLOC_Os03g27390.10.0(Oryza sativa Japonica Group)
STRINGORGLA03G0187700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820